Bargavi Thyagarajan
Fred Hutchinson Cancer Research Center
9 Papers
2 Citations
Bargavi Thyagarajan is an academic researcher from Fred Hutchinson Cancer Research Center. The author has contributed to research in topics: Evolvability & Hemagglutinin. The author has an hindex of 2, co-authored 3 publications.
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Papers
Signature morphoelectric properties of diverse GABAergic interneurons in the human neocortex
Brian Lee,Rachel A. Dalley,Jeremy A. Miller,Thomas Chartrand,Jennie Close,Rusty Mann,Alice Mukora,Lindsay Ng,Lauren Alfiler,Katherine Baker,Darren Bertagnolli,Krissy Brouner,Tamara Casper,Eva Csajbok,Nicholas Donadio,Stan L.W. Driessens,Tom Egdorf,Rachel Enstrom,Anna A. Galakhova,Amanda Gary,Emily Gelfand,Jeff Goldy,Kris HadleyK. Hadley,Tim S. Heistek,DiJon Hill,W. Hou,Nelson Johansen,Nikolas L. Jorstad,Lisa Kim,Ágnes Katalin Kocsis,Lauren Kruse,Michael Kunst,Gabriela Leon,Brian Long,Matthew Mallory,Michelle Maxwell,Medea McGraw,Delissa A. McMillen,Erica J. Melief,Gábor Molnár,Marty T. Mortrud,Dakota Newman,Julie Nyhus,Ximena Opitz-Araya,A. Ozsvár,Trangthanh Pham,Alice Pom,Lydia Potekhina,Ramkumar Rajanbabu,Augustin Ruiz,Susan M. Sunkin,Ildikó Szöts,Naz Taskin,Bargavi Thyagarajan,Michael Tieu,Jessica Trinh,Sara Catalina Grisales Vargas,David J. Vumbaco,Femke Waleboer,Sarah Walling-Bell,Natalie Weed,Grace Williams,Julia Wilson,Shenqin Yao,Thomas Zhou,Pál Barzó,Trygve E. Bakken,Charles Cobbs,Nick Dee,Richard Ellenbogen,Luke A. Esposito,Manuel Ferreira,Nathan W. Gouwens,Benjamin Grannan,Ryder P. Gwinn,Jason Hauptman,Rebecca D. Hodge,Tim Jarsky,C. Dirk Keene,Andrew L. Ko,Anders Rosendal Korshoej,Boaz P. Levi,Kaare Meier,Jeffrey G. Ojemann,Anoop P. Patel,Jacob Ruzevick,Daniel L. Silbergeld,Kimberly A. Smith,Jens Christian Sørensen,Jack Waters,Hongkui Zeng,Jim Berg,M. Capogna,Natalia A. Goriounova,Brian E. Kalmbach,Christiaan P. J. de Kock,Huibert D. Mansvelder,Staci A. Sorensen,Gábor Tamás,Ed S. Lein,Jonathan T. Ting +100 more
TL;DR: The morphoelectric properties of homologous mouse and human neocortical GABAergic neuron types are compared to human types and it is found that human types are more excitable and have a larger spatial extent with less neurite branching.
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Signature morpho-electric properties of diverse GABAergic interneurons in the human neocortex
Brian Lee,Rachel A. Dalley,Jeremy A. Miller,Thomas Chartrand,Jennie L. Close,Rusty Mann,Alice Mukora,Lindsay Ng,Lauren Alfiler,Katherine Baker,Darren Bertagnolli,Krissy Brouner,Tamara Casper,Éva Csajbók,Nick Dee,Nicholas Donadio,Stan L.W. Driessens,Tom Egdorf,Rachel Enstrom,Anna A. Galakhova,Amanda Gary,Emily Gelfand,Jeff Goldy,Kris HadleyK. Hadley,Tim S. Heistek,DiJon Hill,Nelson Johansen,Nikolas L. Jorstad,Lisa Kim,Ágnes Katalin Kocsis,Lauren Kruse,Michael Kunst,Gabriela Leon,Brian Long,Matthew Mallory,Michelle Maxwell,Medea McGraw,Delissa McMillen,Erica J. Melief,Gábor Molnár,Marty Mortrud,Dakota Newman,Julie Nyhus,Ximena Opitz-Araya,Trangthanh Pham,Alice Pom,Lydia Potekhina,Ramkumar Rajanbabu,Augustin Ruiz,Susan M. Sunkin,Ildiko Szots,Naz Taskin,Bargavi Thyagarajan,Michael Tieu,Jessica Trinh,Sara Catalina Grisales Vargas,David J. Vumbaco,Femke Waleboer,Natalie Weed,Grace Williams,Julia Wilson,Shenqin Yao,Thomas Zhou,Pál Barzó,Trygve E. Bakken,Charles Cobbs,Richard G. Ellenbogen,Luke A. Esposito,Manuel A. R. Ferreira,Nathan W. Gouwens,Benjamin C. Grannan,Ryder P. Gwinn,Jason S. Hauptman,Rebecca D. Hodge,Tim Jarsky,C. Dirk Keene,Andrew L. Ko,Boaz P. Levi,Jeffrey G. Ojemann,Anoop P. Patel,Jacob Ruzevick,Daniel L. Silbergeld,Kimberly A. Smith,Jack Waters,Hongkui Zeng,Jim Berg,Natalia A. Goriounova,Brian E. Kalmbach,Christiaan P. J. de Kock,Huibert D. Mansvelder,Staci A. Sorensen,Gábor Tamás,Ed S. Lein,Jonathan T. Ting +93 more
TL;DR: In this paper , the authors employed rapid GABAergic neuron viral labeling plus unbiased patch-seq sampling in brain slices to define the signature morpho-electric properties of GABAergic neurons in the human neocortex.
Enhancer-AAVs allow genetic access to oligodendrocytes and diverse populations of astrocytes across species
John K. Mich,Smrithi Sunil,Nelson Johansen,Refugio A. Martinez,Mckaila Leytze,Bryan B. Gore,Joseph T. Mahoney,Yoav Ben-Simon,Yemeserach Bishaw,Krissy Brouner,Jazmin Campos,Ryan Canfield,Tamara Casper,Nick Dee,Tom Egdorf,Amanda Gary,Shane Gibson,Jeff Goldy,Erin L. Groce,Daniel Hirschstein,Luke Loftus,Nick Lusk,Jocelin Malone,Naomi Martin,Deja Monet,Victoria Omstead,Ximena Opitz-Araya,Aaron Oster,Christina A. Pom,Lydia Potekhina,Melissa Reding,Christine Rimorin,Augustin Ruiz,Adriana E. Sedeno-Cortes,Nadiya V. Shapovalova,Michael Taormina,Naz Taskin,Michael Tieu,Nasmil J. Valera Cuevas,Natalie Weed,Sharon Way,Zizhen Yao,Delissa A. McMillen,Michael Kunst,Medea McGraw,Bargavi Thyagarajan,Jack Waters,Trygve E. Bakken,Shenqin Yao,Kimberly A. Smith,Karel Svoboda,Kaspar Podgorski,Yoshiko Kojima,Gregory D. Horwitz,Hongkui Zeng,Tanya L. Daigle,Ed S. Lein,Bosiljka Tasic,Jonathan T. Ting,Boaz P. Levi +59 more
TL;DR: A new suite of adeno-associated viral (AAV)-based genetic tools to enable genetic access to astrocytes and oligodendrocyte populations and their roles across species, disease states, and behavioral epochs is built.
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A suite of enhancer AAVs and transgenic mouse lines for genetic access to cortical cell types
Yoav Ben-Simon,Marcus Hooper,Sujatha Narayan,Tanya L. Daigle,Deepanjali Dwivedi,Sharon W. Way,Aaron Oster,David A. Stafford,John K. Mich,Michael J. Taormina,Ximena Opitz-Araya,Jada R. Roth,Jason R. Alexander,Shona Allen,Adam Amster,Joel Arbuckle,Angela Ayala,Pamela Baker,Trygve E. Bakken,Tyler Barcelli,Stuard Barta,Jacqueline L. Bendrick,Darren Bertagnolli,Cameron Bielstein,Prajal Bishwakarma,Jessica Bowlus,Gabriella Boyer,Krissy Brouner,B. Casian,Tamara Casper,Anish Chakka,Rushil Chakrabarty,Rebecca K. Chance,Sakshi Chavan,Kaity Colbert,Forrest Collman,Scott Daniel,M. DePartee,Peter DiValentin,Nicholas Donadio,Nadezhda Dotson,Tom Egdorf,Tim P. Fliss,Mariano Gabitto,Jazmin Garcia,Amanda Gary,Molly Gasperini,Jessica Gloe,Jeff Goldy,Bryan B. Gore,Lucas T. Graybuck,Noah Greisman,Francoise Haeseleer,Carliana Halterman,Zeb Haradon,Sam Hastings,Olivia Helback,Windy Ho,Dirk Hockemeyer,Cindy Huang,Sydney Huff,Avery C. Hunker,Nelson Johansen,Danielle L. Jones,Zoe Juneau,Brian E. Kalmbach,Madhav Kannan,Shannon Khem,Emily Kussick,Rana Kutsal,Rachael Larsen,Changkyu Lee,Angus Y. Lee,Madison Leibly,Garreck H. Lenz,Su Li,Elizabeth Liang,Nick Lusk,Zach Madigan,Jessica Malloy,Jocelin Malone,Rachel A. McCue,J. Melchor,Tyler Mollenkopf,Skyler Moosman,Elyse Morin,Dakota Newman,Lydia Ng,Kiet D. Ngo,Victoria Omstead,Sven Otto,Alana A. Oyama,Nick Pena,Elliot Phillips,Christina A. Pom,Lydia Potekhina,Shea Ransford,Patrick Ray,Dean F. Rette,Cade Reynoldson,Christine Rimorin,Dana B. Rocha,Raymond Sanchez,Lane Sawyer,Adriana E. Sedeno-Cortes,Josh Sevigny,Nadiya V. Shapovalova,Noah Shepard,Lyudmila Shulga,Ana R. Sigler,La’Akea Siverts,Sherif Soliman,Saroja Somasundaram,Brian Staats,Kaiya Stewart,Eric Szelenyi,Michael Tieu,Cameron Trader,Alex Tran,C. Velthoven,Miranda Walker,Yimin Wang,Natalie Weed,Morgan E. Wirthlin,Toren Wood,Brooke Wynalda,Thomas Zhou,Jeanelle Ariza,Nick Dee,Melissa Reding,Kara Ronellenfitch,Shoaib Mufti,Susan M. Sunkin,Kimberly A. Smith,Luke A. Esposito,J. Waters,Bargavi Thyagarajan,Shenqin Yao,Ed S. Lein,Boaz P. Levi,John Ngai,Jonathan T. Ting,Bosiljka Tasic +142 more
Abstract: The mammalian cortex is comprised of cells classified into types according to shared properties. Defining the contribution of each cell type to the processes guided by the cortex is essential for understanding its function in health and disease. We use transcriptomic and epigenomic cortical cell-type taxonomies from mouse and human to define marker genes and putative enhancers and create a large toolkit of transgenic lines and enhancer adeno-associated viruses (AAVs) for selective targeting of cortical cell populations. We report creation and evaluation of fifteen transgenic driver lines, two reporter lines, and >1,000 different enhancer AAV vectors covering most subclasses of cortical cells. The tools reported here have been made publicly available, and along with the scaled process of tool creation, evaluation, and modification, they will enable diverse experimental strategies toward understanding mammalian cortex and brain function.
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Enhancer AAVs for targeting spinal motor neurons and descending motor pathways in rodents and macaque.
Emily Kussick,Nelson Johansen,Naz Taskin,Ananya Chowdhury,Meagan A. Quinlan,Alex Fraser,Andrew G. Clark,Brooke Wynalda,Erin L. Groce,Melissa Reding,Elizabeth Liang,Lyudmila Shulga,Cindy Huang,Tamara Casper,Windy Ho,Yuan Gao,Cindy T. J. van Velthoven,Cassandra Sobieski,Rebecca Ferrer,Melissa R. Berg,Britni C. Curtis,Chris English,Jesse C. Day,Michal G. Fortuna,Nicholas Donadio,Dakota Newman,Shenqin Yao,Anish Chakka,Jeff Goldy,Amy Torkelson,Junitta Guzman,Rushil Chakrabarty,Beagen Nguy,Nathaniel Guilford,Vonn Wright,Kara Ronellenfitch,Robyn Naidoo,Jaimie Kenney,Ali Williford,Charu Ramakrishnan,Antonia Drinnenberg,Kathryn Gudsnuk,Bargavi Thyagarajan,Kimberly A. Smith,Nick Dee,K. Deisseroth,Bosiljka Tasic,Boaz P. Levi,Rebecca Hodge,Trygve E. Bakken,Ed S. Lein,Jonathan T. Ting,Tanya L. Daigle +52 more
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