Nutrient-efficient crops are a solution to the two grand challenges of modern agriculture: improving food security while reducing environmental impacts. The primary challenges are (1) nitrogen (N) and phosphorus (P) efficiency; (2) potassium (K), calcium (Ca), and magnesium (Mg) efficiency for acid soils; and (3) iron (Fe) and zinc (Zn) efficiency for alkaline soils. Root phenotypes are promising breeding targets for each of these. The Topsoil Foraging ideotype is beneficial for P capture and should also be useful for capture of K, Ca, and Mg in acid soils. The Steep, Cheap, and Deep ideotype for subsoil foraging is beneficial for N and water capture. Fe and Zn capture can be improved by targeting mechanisms of metal mobilization in the rhizosphere. Root hairs and phenes that reduce the metabolic cost of soil exploration should be prioritized in breeding programs. Nutrient-efficient crops should provide benefits at all input levels. Although our current understanding is sufficient to deploy root phenotypes for improved nutrient capture in crop breeding, this complex topic does not receive the resources it merits in either applied or basic plant biology. Renewed emphasis on these topics is needed in order to develop the nutrient-efficient crops urgently needed in global agriculture.

https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.15738

Root phenotypes for improved nutrient capture: an underexploited opportunity for global agriculture.

Crop Improvement from Phenotyping Roots: Highlights Reveal Expanding Opportunities.

Root architecture can be targeted in breeding programs to develop crops with better capture of water and nutrients. In rich nations, such crops would reduce production costs and environmental pollution and, in developing nations, they would improve food security and economic development. Crops with deeper roots would have better climate resilience while also sequestering atmospheric CO2 . Deeper rooting, which improves water and N capture, is facilitated by steeper root growth angles, fewer axial roots, reduced lateral branching, and anatomical phenotypes that reduce the metabolic cost of root tissue. Mechanical impedance, hypoxia, and Al toxicity are constraints to subsoil exploration. To improve topsoil foraging for P, K, and other shallow resources, shallower root growth angles, more axial roots, and greater lateral branching are beneficial, as are metabolically cheap roots. In high-input systems, parsimonious root phenotypes that focus on water capture may be advantageous. The growing prevalence of Conservation Agriculture is shifting the mechanical impedance characteristics of cultivated soils in ways that may favor plastic root phenotypes capable of exploiting low resistance pathways to the subsoil. Root ideotypes for many low-input systems would not be optimized for any one function, but would be resilient against an array of biotic and abiotic challenges. Root hairs, reduced metabolic cost, and developmental regulation of plasticity may be useful in all environments. The fitness landscape of integrated root phenotypes is large and complex, and hence will benefit from in silico tools. Understanding and harnessing root architecture for crop improvement is a transdisciplinary opportunity to address global challenges.

Harnessing root architecture to address global challenges.

Phosphorus is an essential macronutrient for plant growth and development. Root system architecture (RSA) affects a plant's ability to obtain phosphate, the major form of phosphorus that plants uptake. In this review, I first consider the relationship between RSA and plant phosphorus-acquisition efficiency, describe how external phosphorus conditions both induce and impose changes in the RSA of major crops and of the model plant Arabidopsis, and discuss whether shoot phosphorus status affects RSA and whether there is a universal root developmental response across all plant species. I then summarize the current understanding of the molecular mechanisms governing root developmental responses to phosphorus deficiency. I also explore the possible reasons for the inconsistent results reported by different research groups and comment on the relevance of some studies performed under laboratory conditions to what occurs in natural environments.

Root developmental responses to phosphorus nutrition

Root phenotypic plasticity has been proposed as a target for the development of more productive crops in variable environments. However, the plasticity of root anatomical and architectural responses to environmental cues is highly complex, and the consequences of these responses for plant fitness are poorly understood. We propose that root phenotypic plasticity may be beneficial in natural or low-input systems in which the availability of soil resources is spatiotemporally dynamic. Crop ancestors and landraces were selected with multiple stresses, competition, significant root loss and heterogenous resource distribution which favored plasticity in response to resource availability. However, in high-input agroecosystems, the value of phenotypic plasticity is unclear, since human management has removed many of these constraints to root function. Further research is needed to understand the fitness landscape of plastic responses including understanding the value of plasticity in different environments, environmental signals that induce plastic responses, and the genetic architecture of plasticity before it is widely adopted in breeding programs. Phenotypic plasticity has many potential ecological, and physiological benefits, but its costs and adaptive value in high-input agricultural systems is poorly understood and merits further research.

/pdf/should-root-plasticity-be-a-crop-breeding-target-4dz9jg7wo2.pdf

Should Root Plasticity Be a Crop Breeding Target

Suboptimal phosphorus (P) availability is a primary constraint to plant growth on Earth. We tested the hypothesis that maize (Zea mays) genotypes with large crown root number (CN) will have shallower rooting depth and improved P acquisition from low-P soils. Maize recombinant inbred lines with contrasting CN were evaluated under suboptimal P availability in greenhouse mesocosms and the field. Under P stress in mesocosms, the large-CN phenotype had 48% greater root respiration, 24% shallower rooting depth, 32% greater root length density in the topsoil, 37% greater leaf P concentration, 48% greater leaf photosynthesis, 33% greater stomatal conductance, and 44% greater shoot biomass than the small-CN phenotype. Under P stress in the field, the large-CN phenotype had 32% shallower rooting depth, 51% greater root length density in the topsoil, 44% greater leaf P concentration, 18% greater leaf photosynthesis, 21% greater stomatal conductance, 23% greater shoot biomass at anthesis, and 28% greater yield than the small-CN phenotype. These results support the hypothesis that large CN improves plant P acquisition from low-P soils by reducing rooting depth and increasing topsoil foraging. The large-CN phenotype merits consideration as a selection target to improve P capture in maize and possibly other cereal crops.

Large Crown Root Number Improves Topsoil Foraging and Phosphorus Acquisition.

Agricultural intensification weakens the soil health index and stability of microbial networks

Impact of aeration rate on phosphorus conversion and bacterial community dynamics in phosphorus-enriched composting.

Phosphorus transformation behavior and phosphorus cycling genes expression in food waste composting with hydroxyapatite enhanced by phosphate-solubilizing bacteria.

Combined Application of Calcium-Magnesium Phosphate Fertilizer with Soluble Phosphorus Improves Maize Growth in a Calcareous Soil

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