Anne Siegel
University of Rennes
144 Papers
376 Citations
Anne Siegel is an academic researcher from University of Rennes. The author has contributed to research in topics: Computer science & Metabolic network. The author has an hindex of 25, co-authored 131 publications. Previous affiliations of Anne Siegel include Chalmers University of Technology & Centre national de la recherche scientifique.
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Papers
Geometric representation of substitutions of Pisot type
Vincent Canterini,Anne Siegel +1 more
TL;DR: In this article, it was shown that a substitutive dynamical system of Pisot type contains a factor which is isomorphic to a minimal rotation on a torus, if the substitution is unimodular and satisfies a certain combinatorial condition.
Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks
Sylvain Prigent,Clémence Frioux,Simon M. Dittami,Sven Thiele,Abdelhalim Larhlimi,Guillaume Collet,Fabien Gutknecht,Jeanne Got,Damien Eveillard,Jérémie Bourdon,Frédéric Plewniak,Thierry Tonon,Anne Siegel +12 more
TL;DR: Meneco as mentioned in this paper reformulates gap-filling as a qualitative combinatorial optimization problem, omitting constraints raised by the stoichiometry of a metabolic network considered in other methods, and solves this problem using Answer Set Programming.
Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming
Carito Guziolowski,Santiago Videla,Federica Eduati,Sven Thiele,Thomas Cokelaer,Anne Siegel,Julio Saez-Rodriguez +6 more
TL;DR: Caspo as mentioned in this paper is an open-source Python package that provides a powerful platform to learn and characterize logic models by leveraging the rich modeling language and solving technologies of Answer Set Programming.
MiR-202 controls female fecundity by regulating medaka oogenesis
Jérôme Bugeon,Amine Bouchareb,Laure Henry,Clara Delahaye,Clara Delahaye,Fabrice Legeai,Fabrice Legeai,Jérôme Montfort,Aurélie Le Cam,Anne Siegel,Julien Bobe,Violette Thermes +11 more
TL;DR: In this paper, the role of miR-202, a miRNA predominantly expressed in male and female gonads in several vertebrate species, was investigated in the medaka ovary and generated a mutant line using CRISPR/Cas9 genome editing to determine its importance for reproductive success with special interest for egg production.
Automate des préfixes-suffixes associé à une substitution primitive
Vincent Canterini,Anne Siegel +1 more
TL;DR: In this article, a conjugaison en mesure entre le decalage sur le systeme dynamique associe a une substitution primitive and une transformation adique sur le support d'un sous-shift de type fini is explicite.