Andreas Maier
16 Papers
3 Citations
Andreas Maier is an academic researcher. The author has contributed to research in topics: Computer science & Biology. The author has an hindex of 2, co-authored 6 publications.
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Papers
Democratizing knowledge representation with BioCypher.
Sebastian Lobentanzer,Patrick Aloy,Jan Baumbach,Balazs Bohar,Katharina Danhauser,Tunca Dougan,Johann Dreo,Ian Dunham,Adrià Fernández-Torras,Benjamin M. Gyori,Michael Hartung,Charles Tapley Hoyt,Christoph Klein,Tamas Korcsmaros,Andreas Maier,Matthias Mann,David Ochoa,Elena Pareja-Lorente,Martin Preusse,Niklas Probul,Benno Schwikowski,Bunyamin Sen,Maximilian T. Strauss,D. Turei,Erva Ulusoy,Judith A. H. Wodke,Julio Saez-Rodriguez +26 more
TL;DR: This work standardises the framework of knowledge graph creation in BioCypher, a FAIR (findable, accessible, interoperable, reusable) framework to transparently build biomedical knowledge graphs while preserving provenances of the source data.
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Lacking mechanistic disease definitions and corresponding association data hamper progress in network medicine and beyond
Sepideh Sadegh,James Skelton,Elisa Anastasi,Andreas Maier,Klaudia Adamowicz,Anna Möller,Nils M. Kriege,J.E. Kronberg,Toomas Haller,Tim Kacprowski,Anil Wipat,Jan Baumbach,David Blumenthal +12 more
TL;DR: In this article , the authors show that large-scale disease association data should be used with care for pathomechanism mining and that analyses of such data can be accompanied by close-up analyses of molecular data for well-characterized patient cohorts.
9
Drugst.One - A plug-and-play solution for online systems medicine and network-based drug repurposing
Andreas Maier,Michael Hartung,Mark Abovsky,Klaudia Adamowicz,Gary D. Bader,David Blumenthal,Jing Chen,Maria L. Elkjaer,Markus Hoffmann,Igor Jurisica,Max Kotlyar,Olga Lazareva,Hagai Levi,Markus List,Sebastian Lobentanzer,Joseph Loscalzo,Noël Malod-Dognin,Q. Manz,Julian Matschinske,Mhaned Oubounyt,Alexander R. Pico,Rudolf T. Pillich,Dexter Pratt,Sepideh Sadegh,Julio Saez-Rodriguez,Gideon M. Shaked,Ron Shamir,Nico Trummer,Uğur Turhan,Rui-Sheng Wang,O. Zolotareva,Jan Baumbach +31 more
TL;DR: Drugst.One as discussed by the authors is a platform that assists specialized computational medicine tools in becoming user-friendly, web-based utilities for drug repurposing, turning any system biology software into an interactive web tool for modeling and analyzing complex protein-drug-disease networks.
7
Online bias-aware disease module mining with ROBUST-Web
Suryadipto Sarkar,Marta Lucchetta,Andreas Maier,Mohamed M Abdrabbou,Jan Baumbach,Markus List,Martin H. Schaefer,David Blumenthal +7 more
TL;DR: Robust-Web as mentioned in this paper is a web application for disease module mining with bias-aware edge costs for the underlying Steiner tree model, which allows to correct for study bias in protein-protein interaction networks.
A plug-and-play solution to bring network exploration and drug repurposing to biomedical web platforms
Michael Hartung,Andreas Maier,Sepideh Sadegh,Julian Matschinske,Markus List,O. Zolotareva,Jan Baumbach +6 more
- 26 Aug 2022
TL;DR: Drugst.One as mentioned in this paper is a plug-and-play solution for biomedical web-application developers in need of a feature-rich network explorer closing the gap between gene sets or modules and drugs.