The history of African indigenous cattle and their adaptation to environmental and human selection pressure is at the root of their remarkable diversity. Characterization of this diversity is an essential step towards understanding the genomic basis of productivity and adaptation to survival under African farming systems. We analyze patterns of African cattle genetic variation by sequencing 48 genomes from five indigenous populations and comparing them to the genomes of 53 commercial taurine breeds. We find the highest genetic diversity among African zebu and sanga cattle. Our search for genomic regions under selection reveals signatures of selection for environmental adaptive traits. In particular, we identify signatures of selection including genes and/or pathways controlling anemia and feeding behavior in the trypanotolerant N’Dama, coat color and horn development in Ankole, and heat tolerance and tick resistance across African cattle especially in zebu breeds. Our findings unravel at the genome-wide level, the unique adaptive diversity of African cattle while emphasizing the opportunities for sustainable improvement of livestock productivity on the continent.

/pdf/the-genome-landscape-of-indigenous-african-cattle-3ay5tijn5b.pdf

The genome landscape of indigenous African cattle

Almost a century of systematic anthropological research on pastoral nomads has produced significant data and theory for understanding these mobile societies. Substantially less attention has been devoted to complex sociopolitical organization among pastoral nomadic groups and, in particular, to the large-scale polities referred to as nomadic confederations, states, or sometimes empires. This article reviews established ideas for how and why complex organization emerged among nomadic groups and then considers these ideas in the context of recent archaeological theory on statehood and new material evidence for pastoral nomadic prehistory. Revised conceptions of both the state and the nomad suggest that pastoral nomadic polities represent alternative forms of complex organization that were different from classic Old World states but still quite complex in unexpected ways. These organizational differences resulted from the mobile and flexible politics practiced among herding peoples and gave rise to regional polities based on spatial networking, distributed authority, and innovations in transport and exchange.

Alternative Complexities: The Archaeology of Pastoral Nomadic States

/pdf/from-the-inside-out-upscaling-organic-residue-analyses-of-51u8nxo94u.pdf

From the inside out: Upscaling organic residue analyses of archaeological ceramics

Cattle pastoralism plays a central role in human livelihood in Africa. However, the genetic history of its success remains unknown. Here, through whole-genome sequence analysis of 172 indigenous African cattle from 16 breeds representative of the main cattle groups, we identify a major taurine × indicine cattle admixture event dated to circa 750–1,050 yr ago, which has shaped the genome of today’s cattle in the Horn of Africa. We identify 16 loci linked to African environmental adaptations across crossbred animals showing an excess of taurine or indicine ancestry. These include immune-, heat-tolerance- and reproduction-related genes. Moreover, we identify one highly divergent locus in African taurine cattle, which is putatively linked to trypanotolerance and present in crossbred cattle living in trypanosomosis-infested areas. Our findings indicate that a combination of past taurine and recent indicine admixture-derived genetic resources is at the root of the present success of African pastoralism. Whole-genome sequence analysis of 172 indigenous African cattle from 16 breeds identifies 16 loci linked to environmental adaptations among crossbred animals, including a highly divergent locus in African taurine cattle putatively linked to trypanotolerance.

/pdf/the-mosaic-genome-of-indigenous-african-cattle-as-a-unique-j93o19wnw5.pdf

The mosaic genome of indigenous African cattle as a unique genetic resource for African pastoralism

This study was conducted to evaluate the applicability of crAssphage, pepper mild mottle virus (PMMoV), and tobacco mosaic virus (TMV) as indicators of the reduction of human enteric viruses during wastewater treatment. Thirty-nine samples were collected from three steps at a wastewater treatment plant (raw sewage, secondary-treated sewage, and final effluent) monthly for a 13-month period. In addition to the three indicator viruses, eight human enteric viruses [human adenoviruses, JC and BK polyomaviruses, Aichi virus 1 (AiV-1), enteroviruses, and noroviruses of genogroups I, II, and IV] were tested by quantitative PCR. Indicator viruses were consistently detected in the tested samples, except for a few final effluents for crAssphage and TMV. The mean concentrations of crAssphage were significantly higher than those of most tested viruses. The concentrations of crAssphage in raw sewage were positively correlated with the concentrations of all tested human enteric viruses (p <0.05), suggesting the applicability of crAssphage as a suitable indicator to estimate the concentrations of human enteric viruses in raw sewage. The reduction ratios of AiV-1 (1.8 ± 0.7 log10) were the lowest among the tested viruses, followed by TMV (2.0 ± 0.3 log10) and PMMoV (2.0 ± 0.4 log10). Our findings suggested that the use of not only AiV-1 and PMMoV but also TMV as indicators of reductions in viral levels can be applicable during wastewater treatment.

/pdf/applicability-of-crassphage-pepper-mild-mottle-virus-and-14jobw67is.pdf

Applicability of crAssphage, pepper mild mottle virus, and tobacco mosaic virus as indicators of reduction of enteric viruses during wastewater treatment.

Cattle pastoralism is an important trait of African cultures. Ethnographic studies describe the central role played by domestic cattle within many societies, highlighting its social and ideological value well beyond its mere function as ‘walking larder’. Historical depth of this African legacy has been repeatedly assessed in an archaeological perspective, mostly emphasizing a continental vision. Nevertheless, in-depth site-specific studies, with a few exceptions, are lacking. Despite the long tradition of a multi-disciplinary approach to the analysis of pastoral systems in Africa, rarely do early and middle Holocene archaeological contexts feature in the same area the combination of settlement, ceremonial and rock art features so as to be multi-dimensionally explored: the Messak plateau in the Libyan central Sahara represents an outstanding exception. Known for its rich Pleistocene occupation and abundant Holocene rock art, the region, through our research, has also shown to preserve the material evidence of a complex ritual dated to the Middle Pastoral (6080–5120 BP or 5200–3800 BC). This was centred on the frequent deposition in stone monuments of disarticulated animal remains, mostly cattle. Animal burials are known also from other African contexts, but regional extent of the phenomenon, state of preservation of monuments, and associated rock art make the Messak case unique. GIS analysis, excavation data, radiocarbon dating, zooarchaeological and isotopic (Sr, C, O) analyses of animal remains, and botanical information are used to explore this highly formalized ritual and the lifeways of a pastoral community in the Holocene Sahara.

/pdf/inside-the-african-cattle-complex-animal-burials-in-the-4nnxqbe078.pdf

Inside the "African Cattle Complex": Animal Burials in the Holocene Central Sahara

As part of the Tunisian-Italian archaeological joint mission to the Sahara, a research project (survey and excavation) has focused since 2015 on the study of the funerary archaeology of the prehistoric and historical communities of southern Tunisia. The surveyed area, located along the southern and eastern edges of Chott el Jerid (governorate of Kebili), was selected, after scrutinizing the information collected by the “Service Geographique de l'Armee Francaise” during the early 20th century about the funerary structures. In this paper, we present two main archaeological funerary contexts and the methodology applied for the photogrammetric documentation of the architectural features of the structures. Then we present the post-processing of the point clouds carried out to obtain a complete data-set for the remote analysis of the excavation sequence of each tumulus. By adopting a multi-scalar approach, from GIS remote analysis to photogrammetric documentation of individual funerary structures, we have tried to optimize the chances of fieldwork activity, taking into consideration whilst so doing the contingencies due to the fluctuating socio-political situation that characterizes some countries of North Africa in recent years.

/pdf/prehistoric-and-historic-monumental-funerary-structures-in-dd13xsccvo.pdf

Prehistoric and historic monumental funerary structures in the “Chott el Jérid” area (Southern Tunisia): the importance of photogrammetry for rapid and complete documentation in Saharan contexts

Handle everyday research tasks with reliable, citation-backed results

Your personal Research Agent to handle research tasks with citation-backed results

Popular Tasks used by Researchers

How can I help with your research?

Meet SciSpace

Get more enhanced response by uploading the PDFs you want me to reference.

No relevant PDFs in your library

SciSpace is the AI research assistant for academics. Run systematic literature reviews on 280M+ papers, and write papers with cited sources. Trusted by 1M+ students, PhDs & researchers.

SciSpace | AI for Research

Analyze PDFs

Code & Manuscripts

Funding & Grants

Literature & Patents

Medical & Clinical Data

Systematic Review

Visualize & Present

Web & Data

Build a Google Scholar-like website for your research.

Build a website

Create charts and images for your research

Create a Chart

Write a paper for submission to a journal

Draft a manuscript

Patent Search

Design eye-catching scientific posters in minutes.

Scientific Poster Generation

Systematic Literature Review

One task is running at the moment. Your messages will be shown right after.

Drag and drop or click here to browse

Loved by <highlight>1 million+</highlight> researchers

Extract a list of specific topics and their sources from unstructured text

Topics

Compare and analyze relevant papers that matches with your search

Papers

Get insights from PDFs and bookmarked papers from your library

My library

Recent searches

Try searching for:

Catch AI-generated content in scholarly and non-scholarly content

{ai} Detector

Ai Writer

Get PDF Summaries, highlighted text explanations 

Chat with PDF

Effortlessly create in-text citations and bibliographies in APA and 2,500 other formats

Citation generator

Get explanations, summaries, and answers on academic papers

Ease up your research workflow with {scispace}'s cohort of exciting AI tools

Elevate your academic writing skills and convey your ideas the way you want

Paraphraser

Explore our range of reading and writing tools

Your file is being prepared and should be ready in a few minutes. If it's a large file, it might take a bit longer. You can close this window, and we'll email you the file when it's done.

You have reached a maximum limit of <strong>{limit}</strong> columns in the table. Remove at least <strong>1</strong> column to add or create another one.

Andrea Monaco

Author Tools

Chat about Author

Papers

Inside the "African Cattle Complex": Animal Burials in the Holocene Central Sahara

Prehistoric and historic monumental funerary structures in the “Chott el Jérid” area (Southern Tunisia): the importance of photogrammetry for rapid and complete documentation in Saharan contexts