André Müller
University of Mainz
31 Papers
119 Citations
André Müller is an academic researcher from University of Mainz. The author has contributed to research in topics: Computer science & Hash function. The author has an hindex of 9, co-authored 24 publications.
Chat about Author
Papers
MetaCache: context-aware classification of metagenomic reads using minhashing
TL;DR: MetaCache is introduced-a novel software for read classification using the big data technique minhashing that consumes significantly less memory compared to the state-of-the-art read classifiers Kraken and CLARK while achieving highly competitive sensitivity and precision at comparable speed.
54
Packing a multidisperse system of hard disks in a circular environment
TL;DR: This work considers the problem of finding the densest closed packing of hard disks with proposed different radii in a circular environment, such that the radius of the circumcircle is minimal, and finds various scaling laws.
48
AnyDSL: a partial evaluation framework for programming high-performance libraries
Roland Leißa,Klaas Boesche,Sebastian Hack,Arsène Pérard-Gayot,Richard Membarth,Philipp Slusallek,André Müller,Bertil Schmidt +7 more
- 24 Oct 2018
TL;DR: This paper presents a clean-slate programming system with a simple, annotation-based, online partial evaluator that operates on a CPS-style intermediate representation that exposes code generation for accelerators via compiler-known higher-order functions that can be subjected to partial evaluation.
47
A big data approach to metagenomics for all-food-sequencing.
Robin Kobus,José Manuel Abuín,José Manuel Abuín,André Müller,Sören Lukas Hellmann,Juan C. Pichel,Tomás F. Pena,Andreas Hildebrandt,Thomas Hankeln,Bertil Schmidt +9 more
TL;DR: An alignment-free k -mer based method for detection and quantification of species composition in food and other complex biological matters that can scale efficiently towards large-scale collections of complex eukaryotic and bacterial reference genomes.
Visualization of genomic aberrations using Affymetrix SNP arrays
TL;DR: A novel open source software tool--IdeogramBrowser--which was specifically designed for use with the Affymetrix SNP arrays is described, which provides an interactive karyotypic visualization of multiple aberration profiles and direct links to GeneCards.
30