Amy Leonardson
Merck & Co.
10 Papers
Amy Leonardson is an academic researcher from Merck & Co.. The author has contributed to research in topics: Gene & Gene expression profiling. The author has an hindex of 10, co-authored 10 publications.
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Papers
Genetics of gene expression and its effect on disease
Valur Emilsson,Gudmar Thorleifsson,Bin Zhang,Amy Leonardson,Florian Zink,Jun Zhu,Sonia Carlson,Agnar Helgason,G. Bragi Walters,Steinunn Gunnarsdottir,Magali Mouy,Valgerdur Steinthorsdottir,Gudrun H. Eiriksdottir,Gyda Bjornsdottir,Inga Reynisdottir,Daniel F. Gudbjartsson,Anna Helgadottir,Aslaug Jonasdottir,Adalbjorg Jonasdottir,Unnur Styrkarsdottir,Solveig Gretarsdottir,Kristinn P. Magnusson,Hreinn Stefansson,Ragnheidur Fossdal,Kristleifur Kristjansson,Hjörtur Gislason,Tryggvi Stefansson,Björn Geir Leifsson,Unnur Thorsteinsdottir,John Lamb,Jeffrey R. Gulcher,Marc L. Reitman,Augustine Kong,Eric E. Schadt,Kari Stefansson +34 more
TL;DR: An extensive transcriptional network constructed from the human adipose data that exhibits significant overlap with similar network modules constructed from mouse adiposeData was identified that is enriched for genes involved in the inflammatory and immune response and has been found to be causally associated to obesity-related traits.
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An integrative genomics approach to infer causal associations between gene expression and disease
Eric E. Schadt,John Lamb,Xia Yang,Jun Zhu,Steve Edwards,Debraj GuhaThakurta,Solveig K. Sieberts,Stephanie A. Monks,Marc L. Reitman,Chunsheng Zhang,Pek Yee Lum,Amy Leonardson,Rolf Thieringer,Joseph M. Metzger,Liming Yang,John C. Castle,Haoyuan Zhu,Shera F Kash,Thomas A. Drake,Alan B. Sachs,Aldons J. Lusis +20 more
TL;DR: It is shown that this approach can predict transcriptional responses to single gene–perturbation experiments using gene-expression data in the context of a segregating mouse population and the utility of this approach is demonstrated by identifying and experimentally validating the involvement of three new genes in susceptibility to obesity.
Variations in DNA elucidate molecular networks that cause disease
Yanqing Chen,Jun Zhu,Pek Yee Lum,Xia Yang,Shirly Pinto,Douglas J. MacNeil,Chunsheng Zhang,John Lamb,Stephen W. Edwards,Solveig K. Sieberts,Amy Leonardson,Lawrence W. Castellini,Susanna Wang,Marie-France Champy,Bin Zhang,Valur Emilsson,Sudheer Doss,Anatole Ghazalpour,Steve Horvath,Thomas A. Drake,Aldons J. Lusis,Eric E. Schadt +21 more
TL;DR: Application of this method to liver and adipose gene expression data generated from a segregating mouse population results in the identification of a macrophage-enriched network supported as having a causal relationship with disease traits associated with metabolic syndrome.
Experimental annotation of the human genome using microarray technology
Daniel D. Shoemaker,Eric E. Schadt,Christopher D. Armour,Yudong D. He,Philip W. Garrett-engele,Paul McDonagh,Patrick M. Loerch,Amy Leonardson,Pek Yee Lum,Guy Cavet,Lani F. Wu,Steven J. Altschuler,Seve Edwards,Jason R. King,J. S. Tsang,Greg Schimmack,Janell M. Schelter,J. Koch,Michael Ziman,Matthew J. Marton,B. Li,P. Cundiff,Thomas R. Ward,John C. Castle,M. Krolewski,Miriam Meyer,Mao Mao,Julja Burchard,Matthew J. Kidd,Hongyue Dai,John W. Phillips,Peter S. Linsley,Roland Stoughton,Stephen W. Scherer,M. S. Boguski +34 more
TL;DR: Using ‘exon’ and ‘tiling’ arrays fabricated by ink-jet oligonucleotide synthesis, an experimental approach is devised to validate and refine computational gene predictions and define full-length transcripts on the basis of co-regulated expression of their exons.
Genetic inheritance of gene expression in human cell lines.
Stephanie A. Monks,Stephanie A. Monks,Amy Leonardson,H. Zhu,P. Cundiff,P. Pietrusiak,Stephen W. Edwards,J. W. Phillips,Alan B. Sachs,Eric E. Schadt +9 more
TL;DR: This work presents the largest survey to date, to the authors' knowledge, of the heritability of gene-expression traits in segregating human populations, and views clusters or networks based on genetic correlation measures and shared QTLs as potentially novel insights into the relationship among genes that may underlie complex traits.
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