Alex Rodriguez
University of Chicago
22 Papers
131 Citations
Alex Rodriguez is an academic researcher from University of Chicago. The author has contributed to research in topics: Workflow & Cloud computing. The author has an hindex of 12, co-authored 22 publications. Previous affiliations of Alex Rodriguez include Argonne National Laboratory.
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Papers
The Globus Galaxies platform: delivering science gateways as a service
Ravi Madduri,Kyle Chard,Ryan Chard,Lukasz Lacinski,Alex Rodriguez,Dinanath Sulakhe,David Kelly,Utpal J. Dave,Ian Foster +8 more
TL;DR: A domain‐independent, cloud‐based science gateway platform, the Globus Galaxies platform, which overcomes this gap by providing a set of hosted services that directly address the needs of science gateway developers.
Prevalence of Inherited Mutations in Breast Cancer Predisposition Genes among Women in Uganda and Cameroon
Babatunde Adedokun,Yonglan Zheng,Paul Ndom,Antony Gakwaya,Timothy Makumbi,Alicia Y. Zhou,Toshio F. Yoshimatsu,Alex Rodriguez,Ravi Madduri,Ravi Madduri,Ian Foster,Ian Foster,Aminah Sallam,Aminah Sallam,Olufunmilayo I. Olopade,Dezheng Huo +15 more
TL;DR: The findings replicate the earlier report of a high proportion of mutations in BRCA1/2 among patients with symptomatic breast cancer in SSA and suggest genetic risk assessment could be integrated into national cancer control plans.
Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types.
Cory C. Funk,Alex M. Casella,Segun Jung,Matthew A. Richards,Alex Rodriguez,Paul Shannon,Rory Donovan-Maiye,Ben Heavner,Kyle Chard,Yukai Xiao,Gustavo Glusman,Nilufer Ertekin-Taner,Todd E. Golde,Arthur W. Toga,Leroy Hood,John D. Van Horn,Carl Kesselman,Ian Foster,Ian Foster,Ravi Madduri,Ravi Madduri,Nathan D. Price,Seth A. Ament +22 more
TL;DR: A scalable footprinting workflow is developed using two state-of-the-art algorithms: Wellington and HINT to detect footprints in 192 ENCODE DNase-seq experiments and predict the genomic occupancy of 1,515 human TFs in 27 human tissues.
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A case study for cloud based high throughput analysis of NGS data using the globus genomics system
Krithika Bhuvaneshwar,Dinanath Sulakhe,Robinder Gauba,Alex Rodriguez,Ravi Madduri,Utpal J. Dave,Lukasz Lacinski,Ian Foster,Yuriy Gusev,Subha Madhavan +9 more
TL;DR: A case study of a practical solution that simplifies terabyte scale data handling and provides advanced tools for NGS data analysis using the Globus Genomics system, which is an enhanced Galaxy workflow system made available as a service.
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GNARE: an environment for grid-based high-throughput genome analysis
Dinanath Sulakhe,Alex Rodriguez,Mark D'Souza,Michael Wilde,Veronika Nefedova,Ian Foster,Natalia Maltsev +6 more
- 09 May 2005
TL;DR: This paper describes how Grid technologies such as Globus, Condor, and the Gryphyn virtual data system were applied in the development of GNARE, a scalable computational system for the high-throughput analysis of genomes.